API

The detailed documentation of all user-operable classes and functions in the CommScores package.

Static Methods

The core sub-library permits parsing and manipulating metabolic models:

from modelseedpy.core import *

• Functional Similarity (FS)
  • fs()
• Growth Yield Difference (GYD)
  • gyd()
• Costless Interaction Potential (CIP)
  • cip()
• Metabolic Resource Overlap (MRO)
  • mro()
• Metabolic Interaction Potential (MIP)
  • mip()
• Biosynthetic Support Score (BSS)
  • bss()
• Potential Cooperation (PC) & Biological Interaction Type (BIT)
  • pc()
• Calculate Scores
  • calculate_scores()
• KBase Output
  • kbase_output()

Class object

The aforementioned static methods can also be used synergistically via the CommScores class object, which allows the parameterization of a model once and the the excution of each of score on the single set of parameters. The score results are subsequently stored in the Class object for succinct reference.